Embedded Files
Network Analysis
Network Analysis
- Arena3Dweb - Interactive 3D visualization of multilayered graphs
- NORMA - Apply network layouts based on node groups.
- NAP - Topological network analysis and comparison
- VICTOR - Visual analytics for clustering comparison
- Viral Infection Network - Host-Virus interaction
- HipMCL - Parallel implementation of MCL graph-based clustering
Text Mining and Data Integration
Text Mining and Data Integration
- DARLING - Disease-bioentity associations with literature mining
- OnTheFly2.0 - Extract biomedical terms from documents (e.g., docx, pdf)
- PREGO - Linking microbes, environments, and processes
- UniRed - Protein clustering based on literature
- BioTextQuest - Document clustering based on common biomedical terms
- BioTextQuesτ v2.0- Document clustering based on common biomedical terms
Genomics/Metagenomics
Genomics/Metagenomics
- Flame - Functional enrichment for multiple lists
- MPRAbase - Browse standard MPRA samples
- Quadrupia - A database of G-quadruplex sequences and clusters
- SCALA - A web application for multimodal analysis of single cell next generation sequencing data
- NMPfamsDB - A database of Novel Metagenome Protein Families
- kmerDB - A database encompassing the set of genomic and proteomic sequence information of each species
- PASTIS - Extreme-scale many-against-many protein similarity search
- Meander - Visualization of genome variations with the use of Hilbert curves
- ProteoSign - Proteomics analysis platform
- Human Gene Correlation Analysis (HGCA) - Human gene clustering based on co-expression patterns
- Vista-Enhancer Browser - A human and mouse transcriptional enhancer resource, validated in vivo in transgenic mouse embryos.
- UHGV - The Unified Human Gut Virome Catalog (UHGV)
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